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Burrows Wheeler Transform freeware
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Burrows Wheeler Transform

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Added: July 05, 2013 | Visits: 508

libUTL++ libUTL++ is a cross-platform C++ class library that provides a set of commonly useful functionality and abstractions to expedite C++ application development. Here are some of the highlights in terms of functionality: utl::Object provides a common interface for basic object functionality such...



Platforms: *nix

License: Freeware Size: 5.67 MB Download (71): libUTL++ Download

Released: June 01, 2012  |  Added: June 01, 2012 | Visits: 209

TandemSearcher The TandemSearcher is a Java based application for searching for tandem repeats in the DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).





Platforms: Windows, Mac, Linux

License: Freeware Size: 43.24 KB Download (27): TandemSearcher Download

Released: July 14, 2012  |  Added: July 14, 2012 | Visits: 152

YeastsIdentification The YeastsIdentification is a Java based application for searching for unique DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).


Platforms: Windows, Mac, Linux

License: Freeware Size: 139.23 KB Download (27): YeastsIdentification Download

Added: September 12, 2013 | Visits: 184

Bowtie for Linux Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human...


Platforms: *nix

License: Freeware Size: 7.34 MB Download (16): Bowtie for Linux Download

Added: August 09, 2010 | Visits: 786

PDL::Transform::Cartography PDL::Transform::Cartography Perl module contains useful cartographic projections. SYNOPSIS # make a Mercator map of Earth use PDL::Transform::Cartography; $a = earth_coast(); $a = graticule(10,2)->glue(1,$a); $t = t_mercator; $w = pgwin(xs); $w->lines($t->apply($a)->clean_lines());...


Platforms: *nix

License: Freeware Size: 2.1 MB Download (79): PDL::Transform::Cartography Download

Added: November 05, 2010 | Visits: 857

PDL::Transform PDL::Transform is a Perl module that coordinate transforms, image warping, and N-D functions. SYNOPSIS use PDL::Transform; my $t = new PDL::Transform:: ( ) $out = $t->apply($in) # Apply transform to some N-vectors (Transform method) $out = $in->apply($t) # Apply transform to some...


Platforms: *nix

License: Freeware Size: 2.1 MB Download (85): PDL::Transform Download

Added: August 12, 2010 | Visits: 1.052

CAD::Drawing::Manipulate::Transform CAD::Drawing::Manipulate::Transform is a Perl module with Matrix methods for CAD::Drawing. Provides 3D transformation methods (based on traditional matrix algorithms) for Drawing.pm objects. Coordinate System All of these methods assume a RIGHT-HANDED coordinate system. If you are using a...


Platforms: *nix

License: Freeware Size: 39.94 KB Download (103): CAD::Drawing::Manipulate::Transform Download

Added: September 16, 2010 | Visits: 863

Grid::Transform Grid::Transform is a Perl module with fast grid transformations. SYNOPSIS use Grid::Transform; $g = Grid::Transform->new([a..o], rows=>5); $g->rotate_270->flip_vertical; print join( , $g->grid), "n"; The Grid::Transform module provides fast methods to transform a grid of arbitrary data...


Platforms: *nix

License: Freeware Size: 36.86 KB Download (80): Grid::Transform Download

Added: July 19, 2013 | Visits: 264

Hilbert-Huang Transform The function plot_hht is a realization of the Hilbert-Huang transform (HHT). The HHT decomposes a signal into intrinsic mode functions (or IMFs), and obtain the instantaneous frequency data. It is designed to work well for data that are nonstationary and nonlinear...


Platforms: Matlab

License: Freeware Size: 1013.76 KB Download (20): Hilbert-Huang Transform Download

Added: May 30, 2013 | Visits: 297

Fast 2D Walsh-Hadamard Transform The function implement the 2D dyadic(Paley) ordered fast in-place Walsh-Hadamard transform, which can be used in signal processing, pattern recognition and Genetic alogorithms. This algorithm uses a Cooley-Tukey type signal flow graph and is implemented in N log2 Nadditions and subtractions. Data...


Platforms: Matlab

License: Freeware Size: 10 KB Download (20): Fast 2D Walsh-Hadamard Transform Download

Added: August 15, 2013 | Visits: 260

sequency-ordered discrete Hadamard transform computes the sequency-ordered discrete Hadamard transform


Platforms: Matlab

License: Freeware Size: 10 KB Download (20): sequency-ordered discrete Hadamard transform Download

Added: August 26, 2013 | Visits: 402

Fast Fourier Transform Algorithm This program is open source code of fast Fourier transform in matlab.Where y is the input argument and p is the normalized size of the input. Lety = [1 2 3 4 ];x= length(y);m= log2(x);p= ceil(m);To call the function useft2(y,p);


Platforms: Matlab

License: Freeware Size: 10 KB Download (23): Fast Fourier Transform Algorithm Download

Added: July 11, 2013 | Visits: 331

Walsh Transform(2D) The function implement the 1D Walash Transform which can be used in signal processing,pattern recognition and Genetic algorithms. The Formula of 1D Walsh Transform is defined as : N-1 q-1 ---- -- 1 | | b[i](m)*b[q-1-i](u) W(u) = --- / f(m)| | (-1) ,u = 0,...,N-1 N ---- | | m=0 i=0 where for...


Platforms: Matlab

License: Freeware Size: 10 KB Download (20): Walsh Transform(2D) Download

Added: June 02, 2013 | Visits: 263

Walsh Transform(1D) The function implement the 1D Walash Transform which can be used in signal processing,pattern recognition and Genetic algorithms. The Formula of 1D Walsh Transform is defined in mfile


Platforms: Matlab

License: Freeware Size: 10 KB Download (18): Walsh Transform(1D) Download

Added: April 30, 2013 | Visits: 259

naturally-ordered discrete Hadamard transform algorithm computes the naturally-ordered discrete Hadamard transform


Platforms: Matlab

License: Freeware Size: 10 KB Download (18): naturally-ordered discrete Hadamard transform algorithm Download

Added: May 08, 2013 | Visits: 388

PHP transForm for Scripts PHP transForm is a form generator and processor that allows a website developer an easy way to view/add/edit/delete data in various databases.In order to use PHP transForm, you must be using at least PHP4.1.1.This PHP version includes the PEAR DB database abstraction code used by PHP...


Platforms: PHP

License: Freeware Size: 10 KB Download (20): PHP transForm for Scripts Download

Added: June 18, 2010 | Visits: 691

Apache::AxKit::Language::SAXMachines Apache::AxKit::Language::SAXMachines is a Perl module that can transform Content With SAX Filters. SYNOPSIS # add the style processor mapping AxAddStyleMap application/x-saxmachines Apache::AxKit::Language::SAXMachines # add the processor AxAddProcessor application/x-saxmachines . #...


Platforms: *nix

License: Freeware Size: 307.2 KB Download (72): Apache::AxKit::Language::SAXMachines Download

Added: October 23, 2010 | Visits: 801

Bake Bake is a small domain specific programming language for describing how to transform one file into another. Bake uses the typical topological sort, but has features that make describing this relatively easy. Bake has patterns, similar to make, but which are part of the dependency graph (unlike...


Platforms: *nix

License: Freeware Size: 94.21 KB Download (78): Bake Download

Added: July 10, 2010 | Visits: 816

P-UMLaut The P-UMLaut tool allows the user to transform UML 2.0 Sequence Diagrams to semantically equivalent Petri Nets. These Petri Nets may then be simulated using the supplied PN simulator (of PEP descent) or operated on with any tool that can work with high level Petri Nets. By plugging different...


Platforms: *nix

License: Freeware Size: 15.9 MB Download (80): P-UMLaut Download

Added: August 17, 2010 | Visits: 881

PDL::FFTW PDL::FFTW is a PDL interface to the Fastest Fourier Transform in the West v2.x. This is a means to interface PDL with the FFTW library. Its similar to the standard FFT routine but its usually faster and has support for real transforms. It works well for the types of PDLs for which was the...


Platforms: *nix

License: Freeware Size: 2.1 MB Download (127): PDL::FFTW Download

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